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Improvement
Prohibit queries to information_schema
Unassigned
Scott Saccone
High Priority
Unresolved
Mar 18, 2014
Mar 18, 2014
Improvement
Substitute variables in complete doc file before processing
Unassigned
Scott Saccone
Low Priority
Unresolved
Jan 15, 2014
Jan 15, 2014
Improvement
Add link to HGVS documentation for things like hgvs_names in dbSNP
Unassigned
Scott Saccone
Low Priority
Unresolved
Jul 10, 2013
Jul 10, 2013
Task
Use the <order_by> to sort results AFTER they're retrieved
Unassigned
Scott Saccone
Very High Priority
Unresolved
Jul 28, 2011
Jun 26, 2013
Cosmetic
Some text sections aren't overflowing in Firefox
Unassigned
Scott Saccone
Low Priority
Unresolved
Mar 22, 2013
Mar 22, 2013
Improvement
Add support for variables in option files
Unassigned
Scott Saccone
Low Priority
Unresolved
Mar 11, 2013
Mar 11, 2013
Task
Find out which ENA feature keys have the partial and codon_start qualifiers
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 26, 2012
Mar 1, 2013
Task
Consider using other ENA files such as EST
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 18, 2012
Oct 28, 2012
Task
Review ENA feature keys with repeated qualifiers
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 18, 2012
Oct 28, 2012
Task
Make auxiliary table for external databases from ENA feature_CDS.db_xref
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 18, 2012
Oct 28, 2012
Task
Get descriptions of database found in ENA DR lines
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 19, 2012
Oct 28, 2012
Task
Link ENA tissue types to Ensembl queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 28, 2012
Oct 28, 2012
Task
Create ENA queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 28, 2012
Oct 28, 2012
Task
Create ENA documentation from feature table specification
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 28, 2012
Oct 28, 2012
Improvement
Add xref queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 6, 2012
Oct 6, 2012
Improvement
Create diagrams for interpopulation relationships for each database
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 6, 2012
Oct 6, 2012
Improvement
Create Graphviz Diagram for interpops
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Oct 6, 2012
Improvement
Modify dbDoc schema to use URL links in queries
Unassigned
Scott Saccone
Very High Priority
Unresolved
Nov 28, 2011
Oct 2, 2012
Improvement
Show related queries for each feature table
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 1, 2012
Oct 1, 2012
Improvement
Create summary web pages for specific features
Unassigned
Scott Saccone
High Priority
Unresolved
Sep 28, 2012
Sep 28, 2012
Improvement
Add data from 'failed' tables to variation queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 24, 2012
Sep 24, 2012
Task
Add snp_id and LD proxy capability to Ensembl queries
Unassigned
Scott Saccone
High Priority
Complete
Sep 12, 2012
Sep 22, 2012
Improvement
Use SQL Parser
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 22, 2012
Sep 22, 2012
Improvement
Alert users to errors in features
Unassigned
Scott Saccone
High Priority
Complete
Sep 14, 2012
Sep 14, 2012
Bug
Check feat_dbsnp_snp for SNPs not in dbSNP database
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 14, 2012
Sep 14, 2012
Bug
If features table is empty after removing errors then delete it
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 14, 2012
Sep 14, 2012
Improvement
Develop system for storing variables and functions in bioq_dbdoc
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Sep 13, 2012
Bug
Do not include "in progress" databases when populating autocomplete tables
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 11, 2012
Sep 11, 2012
Task
Make Ensembl markers a region table
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Sep 6, 2012
Improvement
Add algorithm to make interpops more efficient by eliminating redundancy
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Sep 6, 2012
Task
Ensembl: don't display binary columns
Unassigned
Scott Saccone
Low Priority
Unresolved
Jul 18, 2012
Sep 1, 2012
Improvement
Allow users to search jqgrid tables using jqGrid's built-in search functions
Unassigned
Scott Saccone
High Priority
Unresolved
Aug 20, 2012
Aug 20, 2012
Improvement
Revise dbdoc_util.pl so we don't need to init the database each time
Unassigned
Scott Saccone
High Priority
Unresolved
Aug 20, 2012
Aug 20, 2012
Task
Add detail to Ensembl docs
Unassigned
Scott Saccone
Low Priority
Complete
Jul 18, 2012
Aug 19, 2012
Improvement
Streamline feature processing
Unassigned
Scott Saccone
High Priority
Complete
Aug 19, 2012
Aug 19, 2012
Improvement
Eliminate the table feat_table_keyword
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 19, 2012
Aug 19, 2012
Task
Support 1KG_SITE keyword feature queries
Unassigned
Scott Saccone
Low Priority
Complete
Apr 14, 2012
Aug 19, 2012
Improvement
Add ability to specify margins for interpopulation per-relationships
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 17, 2012
Aug 17, 2012
Improvement
Improve interface for interpopulation order: top/bottom buttons
Unassigned
Scott Saccone
High Priority
Complete
Aug 1, 2012
Aug 17, 2012
Improvement
Add support for auto-interpopulation based on certain attributes, such as position
Unassigned
Scott Saccone
High Priority
Complete
Aug 3, 2012
Aug 17, 2012
Improvement
Show column descriptions for feature tables
Unassigned
Scott Saccone
High Priority
Complete
Aug 5, 2012
Aug 17, 2012
Task
Optimize interpopulation into regions
Unassigned
Scott Saccone
Very High Priority
Complete
Aug 15, 2012
Aug 17, 2012
Improvement
Develop general of method of creating tables of region/region pairs
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 17, 2012
Aug 17, 2012
Improvement
Switch to "show all active relationships" and change order only for active ones
Unassigned
Scott Saccone
High Priority
Complete
Aug 5, 2012
Aug 16, 2012
Task
Create Ensembl queries based on their API
Unassigned
Scott Saccone
Low Priority
Complete
Jun 9, 2012
Aug 15, 2012
Sub-task
Identify queries from Ensembl API
Unassigned
Scott Saccone
Low Priority
Complete
Aug 14, 2012
Aug 15, 2012
Task
Create queries based on Ensembl Browser
Unassigned
Scott Saccone
Low Priority
Complete
Jun 8, 2012
Aug 15, 2012
Sub-task
Create _loc_seq_region, set up interpops, revise Seq Region query
Unassigned
Scott Saccone
Low Priority
Complete
Aug 14, 2012
Aug 15, 2012
Task
Look for Ensembl marker aliases when features are entered
Unassigned
Scott Saccone
Very Low Priority
Unresolved
Apr 14, 2012
Aug 14, 2012
Task
Document the interpopulation process for Ensembl
Unassigned
Scott Saccone
Low Priority
Complete
Jul 18, 2012
Aug 14, 2012
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