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Improvement
Prohibit queries to information_schema
Unassigned
Scott Saccone
High Priority
Unresolved
Mar 18, 2014
Mar 18, 2014
Improvement
Substitute variables in complete doc file before processing
Unassigned
Scott Saccone
Low Priority
Unresolved
Jan 15, 2014
Jan 15, 2014
Improvement
Add link to HGVS documentation for things like hgvs_names in dbSNP
Unassigned
Scott Saccone
Low Priority
Unresolved
Jul 10, 2013
Jul 10, 2013
Task
Use the <order_by> to sort results AFTER they're retrieved
Unassigned
Scott Saccone
Very High Priority
Unresolved
Jul 28, 2011
Jun 26, 2013
Cosmetic
Some text sections aren't overflowing in Firefox
Unassigned
Scott Saccone
Low Priority
Unresolved
Mar 22, 2013
Mar 22, 2013
Improvement
Add support for variables in option files
Unassigned
Scott Saccone
Low Priority
Unresolved
Mar 11, 2013
Mar 11, 2013
Task
Find out which ENA feature keys have the partial and codon_start qualifiers
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 26, 2012
Mar 1, 2013
Task
Consider using other ENA files such as EST
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 18, 2012
Oct 28, 2012
Task
Review ENA feature keys with repeated qualifiers
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 18, 2012
Oct 28, 2012
Task
Make auxiliary table for external databases from ENA feature_CDS.db_xref
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 18, 2012
Oct 28, 2012
Task
Get descriptions of database found in ENA DR lines
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 19, 2012
Oct 28, 2012
Task
Link ENA tissue types to Ensembl queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 28, 2012
Oct 28, 2012
Task
Create ENA queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 28, 2012
Oct 28, 2012
Task
Create ENA documentation from feature table specification
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 28, 2012
Oct 28, 2012
Improvement
Add xref queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 6, 2012
Oct 6, 2012
Improvement
Create diagrams for interpopulation relationships for each database
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 6, 2012
Oct 6, 2012
Improvement
Create Graphviz Diagram for interpops
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Oct 6, 2012
Improvement
Modify dbDoc schema to use URL links in queries
Unassigned
Scott Saccone
Very High Priority
Unresolved
Nov 28, 2011
Oct 2, 2012
Improvement
Show related queries for each feature table
Unassigned
Scott Saccone
Low Priority
Unresolved
Oct 1, 2012
Oct 1, 2012
Improvement
Create summary web pages for specific features
Unassigned
Scott Saccone
High Priority
Unresolved
Sep 28, 2012
Sep 28, 2012
Improvement
Add data from 'failed' tables to variation queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 24, 2012
Sep 24, 2012
Improvement
Use SQL Parser
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 22, 2012
Sep 22, 2012
Bug
Check feat_dbsnp_snp for SNPs not in dbSNP database
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 14, 2012
Sep 14, 2012
Bug
If features table is empty after removing errors then delete it
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 14, 2012
Sep 14, 2012
Improvement
Develop system for storing variables and functions in bioq_dbdoc
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Sep 13, 2012
Bug
Do not include "in progress" databases when populating autocomplete tables
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 11, 2012
Sep 11, 2012
Task
Make Ensembl markers a region table
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Sep 6, 2012
Improvement
Add algorithm to make interpops more efficient by eliminating redundancy
Unassigned
Scott Saccone
Low Priority
Unresolved
Sep 6, 2012
Sep 6, 2012
Task
Ensembl: don't display binary columns
Unassigned
Scott Saccone
Low Priority
Unresolved
Jul 18, 2012
Sep 1, 2012
Improvement
Allow users to search jqgrid tables using jqGrid's built-in search functions
Unassigned
Scott Saccone
High Priority
Unresolved
Aug 20, 2012
Aug 20, 2012
Improvement
Revise dbdoc_util.pl so we don't need to init the database each time
Unassigned
Scott Saccone
High Priority
Unresolved
Aug 20, 2012
Aug 20, 2012
Improvement
Eliminate the table feat_table_keyword
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 19, 2012
Aug 19, 2012
Improvement
Add ability to specify margins for interpopulation per-relationships
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 17, 2012
Aug 17, 2012
Improvement
Develop general of method of creating tables of region/region pairs
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 17, 2012
Aug 17, 2012
Task
Look for Ensembl marker aliases when features are entered
Unassigned
Scott Saccone
Very Low Priority
Unresolved
Apr 14, 2012
Aug 14, 2012
Improvement
Add SQL to XML for keyword processing, interpopulation and finishing
Unassigned
Scott Saccone
Low Priority
Unresolved
Jul 20, 2012
Aug 13, 2012
Task
Define new BioQ option for current group
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 12, 2012
Aug 12, 2012
Task
Set genome and group in database XML
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 12, 2012
Aug 12, 2012
Improvement
Support multiple interpopulation methods - sometimes there are choices
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 9, 2012
Aug 9, 2012
Improvement
Have jqGrid report errors from PHP
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 7, 2012
Aug 7, 2012
Task
Add position-based columns to feature table schema
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 7, 2012
Aug 7, 2012
Task
Add attribute for genome build to bioq_dbdoc.db
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 6, 2012
Aug 6, 2012
Task
Send feature databases as list of options to bioq_query.pl
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 6, 2012
Aug 6, 2012
Improvement
Add column "interpopulation" to feature tables showing how the feature was added
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 5, 2012
Aug 5, 2012
Improvement
Configure Interpops
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 5, 2012
Aug 5, 2012
Task
Have schema support default numeric and alphanumeric queries
Unassigned
Scott Saccone
Low Priority
Unresolved
Apr 14, 2012
Aug 5, 2012
Task
Add support for quoting and "AND" as we did before
Unassigned
Scott Saccone
Very Low Priority
Unresolved
Apr 14, 2012
Aug 5, 2012
Improvement
Automate the process_feat...() and finish_feat...() subroutines as much as possible
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 4, 2012
Aug 4, 2012
Improvement
Add download button for feature tables
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 3, 2012
Aug 3, 2012
Bug
Add sort_tables command to main.pl when creating databases
Unassigned
Scott Saccone
Low Priority
Unresolved
Aug 1, 2012
Aug 1, 2012
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