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Improvement
Alert users to errors in features
Unassigned
Scott Saccone
High Priority
Complete
Sep 14, 2012
Sep 14, 2012
Task
Add snp_id and LD proxy capability to Ensembl queries
Unassigned
Scott Saccone
High Priority
Complete
Sep 12, 2012
Sep 22, 2012
Improvement
Streamline feature processing
Unassigned
Scott Saccone
High Priority
Complete
Aug 19, 2012
Aug 19, 2012
Task
Optimize interpopulation into regions
Unassigned
Scott Saccone
Very High Priority
Complete
Aug 15, 2012
Aug 17, 2012
Sub-task
Create _loc_seq_region, set up interpops, revise Seq Region query
Unassigned
Scott Saccone
Low Priority
Complete
Aug 14, 2012
Aug 15, 2012
Sub-task
Identify queries from Ensembl API
Unassigned
Scott Saccone
Low Priority
Complete
Aug 14, 2012
Aug 15, 2012
Sub-task
Add Ensembl query for predicted exons
Unassigned
Scott Saccone
Low Priority
Complete
Aug 13, 2012
Aug 14, 2012
Sub-task
Add Ensembl query for exons
Unassigned
Scott Saccone
Low Priority
Complete
Aug 13, 2012
Aug 14, 2012
Sub-task
Add Ensembl query for Translation
Unassigned
Scott Saccone
Low Priority
Complete
Aug 13, 2012
Aug 14, 2012
Sub-task
Add Ensembl queries for predicted transcripts
Unassigned
Scott Saccone
Low Priority
Complete
Aug 13, 2012
Aug 13, 2012
Task
Add Ensembl Queries
Unassigned
Scott Saccone
High Priority
Complete
Aug 13, 2012
Aug 14, 2012
Task
In the text shown when a query is clicked, show "features used" rather than keywords used
Unassigned
Scott Saccone
Low Priority
Complete
Aug 13, 2012
Aug 13, 2012
Sub-task
Finish adding documentation for specific databases
Unassigned
Scott Saccone
High Priority
Complete
Aug 12, 2012
Aug 13, 2012
Bug
Have bioq_query.pl replace feature tables with tmp_db.*
Unassigned
Scott Saccone
High Priority
Fixed
Aug 11, 2012
Aug 11, 2012
Bug
Get submit.php working when query= argument passed
Unassigned
Scott Saccone
Very High Priority
Fixed
Aug 11, 2012
Aug 11, 2012
Improvement
Add columns genome_build and group to bioq_dbdoc.db
Unassigned
Scott Saccone
High Priority
Complete
Aug 11, 2012
Aug 12, 2012
Improvement
Add feature table column descriptions
Unassigned
Scott Saccone
High Priority
Complete
Aug 10, 2012
Aug 13, 2012
Improvement
Init interpop table upon new db - add button to freeze
Unassigned
Scott Saccone
High Priority
Complete
Aug 10, 2012
Aug 10, 2012
Improvement
Add pulldown to select database in the queries page
Unassigned
Scott Saccone
High Priority
Complete
Aug 8, 2012
Aug 8, 2012
Task
Have query.php send bioq_query.pl the interpop table rather than the list of interpop relationships
Unassigned
Scott Saccone
Low Priority
Complete
Aug 7, 2012
Aug 7, 2012
Improvement
Switch to "show all active relationships" and change order only for active ones
Unassigned
Scott Saccone
High Priority
Complete
Aug 5, 2012
Aug 16, 2012
Task
Add docs for _loc tables. Add "hide" attribute to bioq_dbdoc.tbl
Unassigned
Scott Saccone
Low Priority
Complete
Aug 5, 2012
Aug 14, 2012
Improvement
Show column descriptions for feature tables
Unassigned
Scott Saccone
High Priority
Complete
Aug 5, 2012
Aug 17, 2012
Improvement
Show error messages from query.php in "Get Features" section
Unassigned
Scott Saccone
High Priority
Complete
Aug 4, 2012
Aug 4, 2012
Improvement
Add links to the core documentation page from each table
Unassigned
Scott Saccone
Low Priority
Incomplete
Aug 3, 2012
Aug 14, 2012
Improvement
Add detail view for feature tables
Unassigned
Scott Saccone
Low Priority
Complete
Aug 3, 2012
Aug 4, 2012
Improvement
Add support for auto-interpopulation based on certain attributes, such as position
Unassigned
Scott Saccone
High Priority
Complete
Aug 3, 2012
Aug 17, 2012
Task
Sort Ensembl tables as necessary
Unassigned
Scott Saccone
Low Priority
Complete
Aug 1, 2012
Aug 13, 2012
Bug
Document the seq_region_name feature - relate to chromosomes
Unassigned
Scott Saccone
Low Priority
Complete
Aug 1, 2012
Aug 14, 2012
Improvement
Improve interface for interpopulation order: top/bottom buttons
Unassigned
Scott Saccone
High Priority
Complete
Aug 1, 2012
Aug 17, 2012
Task
Determine nature of seq_region for genes, markers, etc
Unassigned
Scott Saccone
Low Priority
Complete
Jul 31, 2012
Aug 14, 2012
Task
Indicate that interpops are db-dependent and show the order
Unassigned
Scott Saccone
High Priority
Fixed
Jul 31, 2012
Aug 1, 2012
Task
Determine why we get Ensembl transcript from an NCBI gene entry
Unassigned
Scott Saccone
High Priority
Fixed
Jul 31, 2012
Jul 31, 2012
Task
Show docs for the keywords of a specific feature table
Unassigned
Scott Saccone
High Priority
Complete
Jul 28, 2012
Jul 31, 2012
Task
Revise features section
Unassigned
Scott Saccone
High Priority
Complete
Jul 28, 2012
Jul 30, 2012
Task
Add Ensembl query for exons
Unassigned
Scott Saccone
High Priority
Complete
Jul 27, 2012
Aug 4, 2012
Task
Add a query for Ensembl sequenced regions
Unassigned
Scott Saccone
Low Priority
Complete
Jul 27, 2012
Aug 13, 2012
Task
Add Ensembl interpopulation functions
Unassigned
Scott Saccone
High Priority
Complete
Jul 27, 2012
Aug 14, 2012
Improvement
Allow users to edit feature state and order
Unassigned
Scott Saccone
Low Priority
Complete
Jul 20, 2012
Jul 25, 2012
Improvement
Add "more information" button/section to the "Get Features" section
Unassigned
Scott Saccone
High Priority
Complete
Jul 19, 2012
Jul 25, 2012
Task
Add Ensembl query for sequenced regions
Unassigned
Scott Saccone
High Priority
Complete
Jul 18, 2012
Aug 13, 2012
Task
Create query for Ensembl markers
Unassigned
Scott Saccone
High Priority
Complete
Jul 18, 2012
Jul 27, 2012
Task
Document the interpopulation process for Ensembl
Unassigned
Scott Saccone
Low Priority
Complete
Jul 18, 2012
Aug 14, 2012
Task
Add detail to Ensembl docs
Unassigned
Scott Saccone
Low Priority
Complete
Jul 18, 2012
Aug 19, 2012
Sub-task
Add Ensembl query for splice events
Unassigned
Scott Saccone
Low Priority
Complete
Jul 18, 2012
Aug 13, 2012
Improvement
Add "last updated" to BioqOptions.xml and update this with update_bioq_version.pl
Unassigned
Scott Saccone
Low Priority
Complete
Jul 17, 2012
Jul 26, 2012
Task
Add notes to "What's New" Wiki Pages
Unassigned
Scott Saccone
High Priority
Complete
Jul 12, 2012
Jul 16, 2012
Bug
Add query for clinical sequencing variants
Unassigned
Scott Saccone
High Priority
Complete
Jul 9, 2012
Jul 12, 2012
Improvement
Add mapping data to Ensembl gene and transcript feature tables
Unassigned
Scott Saccone
High Priority
Won't Fix
Jun 13, 2012
Jul 18, 2012
Task
Add genes from regions in Ensembl
Unassigned
Scott Saccone
High Priority
Fixed
Jun 12, 2012
Jul 18, 2012
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